STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_023310Putative mucin-22-like isoform X1. (605 aa)    
Predicted Functional Partners:
C7M84_007249
Putative ATP-dependent RNA helicase DHX34.
   
 0.839
C7M84_004355
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
    
 0.501
C7M84_000883
Nuclear cap-binding protein subunit 1.
    
 0.499
C7M84_024486
Histone H2A deubiquitinase MYSM1.
   
 0.494
C7M84_002311
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.491
C7M84_019102
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.491
C7M84_023327
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.491
C7M84_009129
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.476
C7M84_003261
Small nuclear ribonucleoprotein Sm D3.
   
 0.469
C7M84_005066
Putative splicing factor 3B subunit 1 isoform X1.
   
 0.462
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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