STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_013022Putative E3 ubiquitin-protein ligase HERC1 isoform X4. (742 aa)    
Predicted Functional Partners:
C7M84_013027
Putative E3 ubiquitin-protein ligase HERC1.
 
     0.948
C7M84_013025
Putative E3 ubiquitin-protein ligase HERC1.
 
     0.943
C7M84_017462
Putative E3 ubiquitin-protein ligase HERC2 isoform X1.
 
      0.899
C7M84_013020
Putative E3 ubiquitin-protein ligase HERC1 isoform X3.
 
     0.870
C7M84_013028
Putative E3 ubiquitin-protein ligase HERC1 isoform X1.
  
     0.506
C7M84_013024
Uncharacterized protein.
  
     0.496
C7M84_013021
Uncharacterized protein.
  
     0.466
C7M84_023340
AN1-type zinc finger and ubiquitin domain-containing protein 1.
    
 0.432
C7M84_012868
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.425
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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