STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_010632DNA_pol_E_B domain-containing protein. (352 aa)    
Predicted Functional Partners:
C7M84_024493
DNA polymerase.
   
 0.999
C7M84_008419
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 0.998
C7M84_017767
DNA primase large subunit.
   
 0.990
C7M84_010463
DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.
   
 0.990
C7M84_024534
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 0.987
C7M84_010853
DNA polymerase.
   
 0.984
C7M84_001213
DNA helicase; Belongs to the MCM family.
   
 0.965
C7M84_002104
Putative replication factor C subunit 3.
   
 0.960
C7M84_015594
Putative replication factor C subunit 2-like.
   
 0.952
C7M84_011448
Replication factor C subunit 1.
   
 0.951
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.