STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_021833Lys-63-specific deubiquitinase BRCC36. (271 aa)    
Predicted Functional Partners:
C7M84_020562
BRCA1-A complex subunit MERIT40.
    
 0.999
C7M84_003293
BRCA1-A complex subunit Abraxa.
    
 0.990
C7M84_014362
26S proteasome non-ATPase regulatory subunit 6.
   
 0.975
C7M84_021625
Endonuclease-reverse transcriptase.
    
 0.965
C7M84_017959
Putative RNA-directed DNA polymerase from mobile element jockey-like.
    
 0.965
C7M84_023157
26S protease regulatory subunit 4; Belongs to the cyclin family.
   
 0.962
C7M84_000970
BRCA1-A complex subunit BRE.
    
 0.961
C7M84_002405
BRCA1-A complex subunit BRE.
    
 0.961
C7M84_018719
Putative 26S proteasome non-ATPase regulatory subunit.
   
 0.957
C7M84_009489
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
   
 0.956
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.