STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_004372Putative phosphatidylinositol transfer protein beta isoform isoform X1. (229 aa)    
Predicted Functional Partners:
C7M84_005836
Uncharacterized protein.
      
 0.545
C7M84_010236
Protein kinase C; Belongs to the protein kinase superfamily.
    
 0.437
C7M84_004512
VAMP-associated protein.
    
 
 0.432
C7M84_013814
Ubiquitin-like domain-containing CTD phosphatase 1.
    
 0.418
C7M84_016808
Putative carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1.
    
 0.417
C7M84_009798
Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
    
 0.417
C7M84_007148
Serine/threonine-protein phosphatase dullard-like protein.
    
 0.417
C7M84_013715
FCP1 homology domain-containing protein.
    
 0.417
C7M84_000780
Putative RNA polymerase II subunit A C-terminal domain phosphatase.
    
 0.417
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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