STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_002834Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family. (72 aa)    
Predicted Functional Partners:
C7M84_017338
Sly1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.633
C7M84_004946
Putative immediate early response 3-interacting protein 1-like.
   
   0.598
C7M84_010434
Putative golgin subfamily A member 5-like.
   
  
 0.574
C7M84_018335
Bifunctional protein NCOAT.
      
 0.473
C7M84_019556
Uncharacterized protein.
      
 0.463
C7M84_015627
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
  
 0.443
C7M84_008268
Small nuclear ribonucleoprotein polypeptide G.
   
    0.436
C7M84_006562
Small nuclear ribonucleoprotein G.
   
    0.436
C7M84_003793
Signal recognition particle 19 kDa protein.
   
    0.424
C7M84_007683
Protein yippee-like; Belongs to the yippee family.
      
 0.414
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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