STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_002037Glycosyl-phosphatidylinositol-linked carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family. (193 aa)    
Predicted Functional Partners:
C7M84_003400
Brix domain-containing protein 1.
   
 
 0.512
C7M84_015155
Brix domain-containing protein 1.
   
 
 0.512
C7M84_024492
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
   0.478
C7M84_023450
Putative 60S ribosomal protein L5.
    
 
 0.447
C7M84_024627
Putative glutamate-rich WD repeat-containing protein 1.
   
  
 0.443
C7M84_018416
Putative glutamate-rich WD repeat-containing protein 1.
   
  
 0.443
C7M84_000453
Brix domain-containing protein.
   
    0.443
C7M84_016970
Putative 25S rRNA (Cytosine-C(5))-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.442
C7M84_015613
Bms1-type G domain-containing protein.
   
  
 0.440
C7M84_004453
Periodic tryptophan protein 2-like protein.
   
    0.436
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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