STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_015733Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (302 aa)    
Predicted Functional Partners:
C7M84_008312
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
   
 
 0.961
C7M84_002900
Ferrochelatase; Belongs to the ferrochelatase family.
     
 0.913
C7M84_006042
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
  
  
 
0.903
C7M84_018713
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
 0.900
C7M84_004636
Cytochrome c-1.
   
 
 0.636
C7M84_010280
Cytochrome c oxidase COX15-like protein.
 
  
 
 0.567
C7M84_018710
Putative NADH dehydrogenase.
   
  
 0.496
C7M84_015807
RNA exonuclease 4.
      
 0.476
C7M84_011273
NADH-ubiquinone oxidoreductase 39 kDa subunit.
   
 
 0.471
C7M84_011510
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.
   
  
 0.454
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.