STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_012906WSSV receptor Rab7. (363 aa)    
Predicted Functional Partners:
C7M84_015840
Putative TBC1 domain family member 15-like isoform X2.
    
 0.978
C7M84_000428
Putative vacuolar fusion protein CCZ1-like.
    
 0.927
C7M84_003976
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
   
 0.906
C7M84_023546
Putative GRIP1-associated protein 1-like.
    
 0.847
C7M84_018021
Vacuolar fusion protein MON1-like protein A.
    
 0.847
C7M84_001900
Cytoplasmic dynein intermediate chain.
     
  0.811
C7M84_002614
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.795
C7M84_011103
Putative osbpl1a.
    
 0.794
C7M84_019014
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.794
C7M84_004523
PDZ domain-containing protein 8.
    
 
 0.715
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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