STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_004616Putative mutS protein-like 4. (899 aa)    
Predicted Functional Partners:
C7M84_021331
Putative DNA mismatch repair protein Mlh3 isoform X13.
 
 0.905
C7M84_006505
Putative PMS1 protein-like 1.
 
 0.904
C7M84_024862
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
 0.840
C7M84_024861
Putative septum site-determining protein MinC.
   
 0.840
C7M84_024860
Putative mutS protein-like 5-like.
   
 0.840
C7M84_023905
Mismatch repair endonuclease PMS2.
 
 0.837
C7M84_023745
Uncharacterized protein.
 
 0.807
C7M84_000663
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
   
 0.713
C7M84_023906
DNA_mis_repair domain-containing protein.
  
 0.705
C7M84_020223
Putative PMS1, postmeiotic segregation increased 2 protein.
  
 0.705
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.