STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_001881ATP-dependent Clp protease proteolytic subunit. (125 aa)    
Predicted Functional Partners:
C7M84_006764
Putative suppressor of potassium transport defect.
  
 
 0.976
C7M84_014803
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial.
 
 
 0.896
C7M84_014804
ClpB_D2-small domain-containing protein.
 
 
 0.896
C7M84_014796
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial.
 
 
 0.890
C7M84_013323
Heat shock protein 10; Belongs to the GroES chaperonin family.
  
 
 0.785
C7M84_023238
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
  
 0.762
C7M84_007874
Ribosomal protein S11.
  
 
 0.753
C7M84_012261
NADH dehydrogenase.
  
 
 0.752
C7M84_014007
NADH dehydrogenase; Belongs to the complex I 20 kDa subunit family.
   
 
 0.729
C7M84_005842
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
  
  
 0.704
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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