STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_022678Putative tetratricopeptide repeat protein 5-like. (429 aa)    
Predicted Functional Partners:
C7M84_005978
Pyrroline-5-carboxylate synthetase.
   
 0.935
C7M84_007357
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.914
C7M84_011533
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.902
C7M84_023450
Putative 60S ribosomal protein L5.
   
 
 0.900
C7M84_007641
Putative neurofilament heavy polypeptide; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.899
C7M84_003874
Putative 60S ribosomal protein L23 isoform X1; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.895
C7M84_018799
Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.889
C7M84_012388
Ribosomal protein L9.
   
 
 0.883
C7M84_023714
Glutamate synthase.
  
 
 0.883
C7M84_010451
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
 
 0.881
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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