STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_019065WD repeat domain phosphoinositide-interacting protein 4. (345 aa)    
Predicted Functional Partners:
C7M84_012895
Autophagy-related protein 2-like protein B.
    
 
 0.577
C7M84_012896
Putative autophagy-related protein 2-like A.
    
 
 0.577
C7M84_004795
Putative tectonin beta-propeller repeat-containing protein isoform X1.
   
  
 0.577
C7M84_020188
Putative WD repeat domain phosphoinositide-interacting protein 2 isoform X1.
   
0.555
C7M84_015662
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 
 0.536
C7M84_000555
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.511
C7M84_010135
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.503
C7M84_008281
Putative beclin-1-like protein isoform X1.
    
 
 0.494
C7M84_020919
Helicase C-terminal domain-containing protein.
 
      0.467
C7M84_012143
Putative ATP-dependent RNA helicase DDX56-like.
 
      0.467
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.