STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_002818Putative RRP15-like protein-like. (142 aa)    
Predicted Functional Partners:
C7M84_000206
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.988
C7M84_015331
Putative ribosome biogenesis protein BRX1-like.
   
 
 0.987
C7M84_000453
Brix domain-containing protein.
   
 
 0.987
C7M84_023173
Putative ribosomal RNA processing protein 1-like.
   
 
 0.980
C7M84_008898
Brix domain-containing protein.
   
 
 0.978
C7M84_015652
Surfeit locus protein 6-like protein.
   
 
 0.968
C7M84_010282
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.956
C7M84_025510
Putative 60S ribosomal protein L24.
   
 
 0.953
C7M84_001472
Uncharacterized protein.
   
 
 0.940
C7M84_003400
Brix domain-containing protein 1.
   
 
 0.929
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.