STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_023923Putative sphingosine-1-phosphate lyase-like. (272 aa)    
Predicted Functional Partners:
C7M84_005138
Putative sphingosine kinase 2.
   
 0.547
C7M84_023922
Putative sphingosine-1-phosphate lyase 1-like.
  
     0.532
C7M84_010495
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.531
C7M84_023082
Putative sphingosine-1-phosphate lyase 1 isoform X2.
  
     0.526
C7M84_006952
C2 domain-containing protein.
     
 0.522
C7M84_006954
Regulating synaptic membrane exocytosis protein 2.
     
 0.522
C7M84_003519
Uncharacterized protein.
     
 0.522
C7M84_021722
Uncharacterized protein.
  
 0.450
C7M84_008432
4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.450
C7M84_018667
Putative 4-aminobutyrate aminotransferase, mitochondrial.
  
 0.450
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.