STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_008862Putative U5 small nuclear ribonucleoprotein 40 kDa protein. (157 aa)    
Predicted Functional Partners:
C7M84_016050
Elongation factor Tu GTP-binding domain protein 2.
   
 0.996
C7M84_019364
Pre-mRNA-processing-splicing factor 8.
   
 0.996
C7M84_006704
Pre-mRNA-processing factor 6.
   
 0.996
C7M84_004151
Uncharacterized protein.
   
 0.993
C7M84_009129
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.976
C7M84_015333
Putative pre-mRNA-processing factor 19-like.
   
 
0.965
C7M84_003261
Small nuclear ribonucleoprotein Sm D3.
   
 0.963
C7M84_020791
Cell division cycle 5-like protein.
   
   0.962
C7M84_001977
WD_REPEATS_REGION domain-containing protein.
    
  
0.960
C7M84_014034
Male reproductive-related microfibril-associated protein.
   
   0.959
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.