STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_005088Uncharacterized protein. (601 aa)    
Predicted Functional Partners:
C7M84_020727
Putative something about silencing protein 10.
   
 0.994
C7M84_018522
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.989
C7M84_007714
Nucleolar protein 6.
   
 0.984
C7M84_018664
DDB1-and CUL4-associated factor 13.
   
 0.965
C7M84_012508
Uncharacterized protein.
   
 
 0.964
C7M84_000214
Putative ATP-dependent RNA helicase DDX24-like.
  
0.963
C7M84_011017
RNA helicase.
  
0.956
C7M84_005549
Putative ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family.
  
0.952
C7M84_006533
Putative ATP-dependent RNA helicase DDX10; Belongs to the DEAD box helicase family.
  
0.951
C7M84_018168
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
  0.946
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.