STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_004263Putative PDZ domain-containing protein. (860 aa)    
Predicted Functional Partners:
C7M84_000330
Cyclin B; Belongs to the cyclin family.
   
 0.968
C7M84_021382
Mitotic spindle assembly checkpoint protein MAD2A.
   
 0.953
C7M84_019376
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta.
   
 0.946
C7M84_003779
Cell division cycle protein 27-like protein.
   
 0.921
C7M84_010525
Putative cell division cycle protein 16-like.
   
 0.918
C7M84_002171
Cell division cycle protein 23-like protein.
   
 0.911
C7M84_005003
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.908
C7M84_008605
Putative anaphase-promoting complex subunit 5-like.
    
 0.906
C7M84_022172
Anaphase-promoting complex subunit 2; Belongs to the cullin family.
   
 0.904
C7M84_016535
Putative mitotic spindle assembly checkpoint protein MAD1-like.
   
 0.902
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.