STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_020317Putative heterogeneous nuclear ribonucleoprotein M-like isoform X1. (175 aa)    
Predicted Functional Partners:
C7M84_020315
BED-type domain-containing protein.
   
   0.863
C7M84_003261
Small nuclear ribonucleoprotein Sm D3.
   
 0.778
C7M84_014819
Putative E1b-55kD-associated protein.
   
 0.770
C7M84_025034
Dosage compensation regulator.
   
 0.711
C7M84_015527
Putative RNA-binding protein 1-like isoform X4.
   
 0.706
C7M84_007403
RRM domain-containing protein.
   
 0.706
C7M84_009129
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.704
C7M84_023282
Calcium homeostasis endoplasmic reticulum protein.
   
 
 0.696
C7M84_001524
Protein suppressor of forked.
   
 0.690
C7M84_014787
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.682
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.