STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_016063Uncharacterized protein. (375 aa)    
Predicted Functional Partners:
C7M84_020707
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.954
C7M84_022506
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.942
C7M84_024004
Uncharacterized protein.
   
 0.928
C7M84_005747
Putative GTP-binding protein SAR1B; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.926
C7M84_008164
Protein transport protein sec16.
   
 0.844
C7M84_012912
Uncharacterized protein.
   
 0.838
C7M84_020787
t-SNARE coiled-coil homology domain-containing protein.
     
 0.694
C7M84_013130
PB1 domain-containing protein.
   
 0.693
C7M84_017565
Putative coatomer subunit alpha.
   
  
 0.646
C7M84_003679
Calnexin.
   
 
 0.629
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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