STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_008299Putative tRNA:m(4)X modification enzyme TRM13-like. (427 aa)    
Predicted Functional Partners:
C7M84_015256
Putative tRNA (Uracil-O(2)-)-methyltransferase.
   
  
 0.631
C7M84_009955
Putative serine/threonine-protein kinase Nek4-like.
   
    0.609
C7M84_016872
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
  
 0.580
C7M84_006421
Putative methyltransferase TARBP1.
   
  
 0.545
C7M84_015255
Uncharacterized protein; Belongs to the complex I LYR family.
   
  
 0.519
C7M84_000062
SAYSvFN domain-containing protein.
      
 0.503
C7M84_002513
Uncharacterized protein.
   
  
 0.493
C7M84_020318
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.479
C7M84_015807
RNA exonuclease 4.
   
    0.445
C7M84_018036
Ubiquitin-like domain-containing protein.
   
    0.443
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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