C7M84_016101 protein (Penaeus vannamei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C7M84_016101

CBFD_NFYB_HMF domain-containing protein. (348 aa)

Predicted Functional Partners:

C7M84_024710

0.987

C7M84_021619

0.910

C7M84_021617

0.910

C7M84_013832

0.868

C7M84_013833

0.868

C7M84_024741

0.866

C7M84_024014

0.690

C7M84_012349

0.619

C7M84_012369

0.572

C7M84_024570

0.476

Your Current Organism:

Penaeus vannamei

NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C7M84_012349	C7M84_016101	A0A423SYS6	A0A423SNZ3	Putative Nuclear transcription factor Y subunit beta.	CBFD_NFYB_HMF domain-containing protein.	0.619
C7M84_012349	C7M84_021617	A0A423SYS6	A0A423S969	Putative Nuclear transcription factor Y subunit beta.	TATA-binding protein.	0.437
C7M84_012349	C7M84_021619	A0A423SYS6	A0A3R7PVN5	Putative Nuclear transcription factor Y subunit beta.	TATA box binding protein.	0.437
C7M84_012349	C7M84_024014	A0A423SYS6	A0A3R7QY46	Putative Nuclear transcription factor Y subunit beta.	Transcription initiation factor IIB.	0.569
C7M84_012349	C7M84_024741	A0A423SYS6	A0A423U072	Putative Nuclear transcription factor Y subunit beta.	Putative TATA box-binding protein-like protein 1.	0.431
C7M84_012369	C7M84_016101	A0A423SYU4	A0A423SNZ3	Ubiquitinyl hydrolase 1.	CBFD_NFYB_HMF domain-containing protein.	0.572
C7M84_013832	C7M84_013833	A0A3R7M072	A0A3R7MRK2	TATA-binding protein-associated factor.	TATA-binding protein-associated factor.	0.933
C7M84_013832	C7M84_016101	A0A3R7M072	A0A423SNZ3	TATA-binding protein-associated factor.	CBFD_NFYB_HMF domain-containing protein.	0.868
C7M84_013832	C7M84_021617	A0A3R7M072	A0A423S969	TATA-binding protein-associated factor.	TATA-binding protein.	0.837
C7M84_013832	C7M84_021619	A0A3R7M072	A0A3R7PVN5	TATA-binding protein-associated factor.	TATA box binding protein.	0.837
C7M84_013832	C7M84_024014	A0A3R7M072	A0A3R7QY46	TATA-binding protein-associated factor.	Transcription initiation factor IIB.	0.535
C7M84_013832	C7M84_024710	A0A3R7M072	A0A423U0B9	TATA-binding protein-associated factor.	CBFD_NFYB_HMF domain-containing protein.	0.809
C7M84_013832	C7M84_024741	A0A3R7M072	A0A423U072	TATA-binding protein-associated factor.	Putative TATA box-binding protein-like protein 1.	0.712
C7M84_013833	C7M84_013832	A0A3R7MRK2	A0A3R7M072	TATA-binding protein-associated factor.	TATA-binding protein-associated factor.	0.933
C7M84_013833	C7M84_016101	A0A3R7MRK2	A0A423SNZ3	TATA-binding protein-associated factor.	CBFD_NFYB_HMF domain-containing protein.	0.868
C7M84_013833	C7M84_021617	A0A3R7MRK2	A0A423S969	TATA-binding protein-associated factor.	TATA-binding protein.	0.837
C7M84_013833	C7M84_021619	A0A3R7MRK2	A0A3R7PVN5	TATA-binding protein-associated factor.	TATA box binding protein.	0.837
C7M84_013833	C7M84_024014	A0A3R7MRK2	A0A3R7QY46	TATA-binding protein-associated factor.	Transcription initiation factor IIB.	0.535
C7M84_013833	C7M84_024710	A0A3R7MRK2	A0A423U0B9	TATA-binding protein-associated factor.	CBFD_NFYB_HMF domain-containing protein.	0.809
C7M84_013833	C7M84_024741	A0A3R7MRK2	A0A423U072	TATA-binding protein-associated factor.	Putative TATA box-binding protein-like protein 1.	0.712

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2023

Credits

Access

Info

About