STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_015603ULP_PROTEASE domain-containing protein. (1148 aa)    
Predicted Functional Partners:
C7M84_003851
Small ubiquitin-related modifier.
    
 0.935
C7M84_008756
Sentrin-specific protease 1.
    
 0.797
C7M84_012141
Heme transporter hrg-1.
    
 0.640
C7M84_016823
Putative aquaporin-3-like; Belongs to the MIP/aquaporin (TC 1.A.8) family.
     
 0.589
C7M84_013311
Nucleolar protein 9.
    
 0.582
C7M84_003653
Ubiquitin-conjugating enzyme E2 c; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.561
C7M84_001272
RanGAP1_C domain-containing protein.
    
 
 0.550
C7M84_009561
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.540
C7M84_018478
Putative sentrin-specific protease 8.
     
 0.522
C7M84_003368
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
    
  0.514
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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