STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_014681Putative DNA repair protein. (388 aa)    
Predicted Functional Partners:
C7M84_022071
Helicase ATP-binding domain-containing protein.
    
 0.986
C7M84_005441
Uncharacterized protein.
    
 0.983
C7M84_003774
Uncharacterized protein.
    
 0.980
C7M84_018025
Putative general transcription factor IIH subunit 1.
    
 0.975
C7M84_019929
Putative DNA repair endonuclease XPF.
    
 0.954
C7M84_016951
DNA repair endonuclease XPF.
    
 0.954
C7M84_014105
Uncharacterized protein.
   
 0.949
C7M84_018617
RPA_C domain-containing protein.
    
 0.946
C7M84_021125
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
 0.945
C7M84_006009
Putative DNA excision repair protein ERCC-6-like.
    
 0.945
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.