STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_011768Putative hypoxia-inducible factor 1 alpha. (403 aa)    
Predicted Functional Partners:
C7M84_023466
Hypoxia inducible factor 1 beta.
    
 0.928
C7M84_011769
Uncharacterized protein.
 
      0.899
C7M84_014363
Bmal1a.
    
 0.790
C7M84_021520
Clock.
    
 0.699
C7M84_007234
Putative circadian locomoter output cycles protein kaput.
    
 0.699
C7M84_002355
Putative melanoma-associated antigen G1-like.
    
 0.607
C7M84_001720
WD_REPEATS_REGION domain-containing protein.
   
    0.553
C7M84_003411
WD repeat-containing protein 6.
   
    0.543
C7M84_015233
Uncharacterized protein.
   
    0.538
C7M84_025013
Structural maintenance of chromosomes protein.
   
    0.533
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.