STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_011313Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (284 aa)    
Predicted Functional Partners:
C7M84_022713
Thymidylate synthase.
  
 
 0.791
C7M84_020149
Phosphoglycerate kinase.
    
 0.700
C7M84_012726
Putative single-stranded DNA-binding protein, mitochondrial.
   
 
 0.689
C7M84_000150
Nudix hydrolase domain-containing protein.
    
  0.689
C7M84_012332
Putative UPF0661 TPR repeat-containing protein C16D10.01c-like.
    
  0.671
C7M84_002269
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.623
C7M84_016571
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.623
C7M84_007801
Nucleoside diphosphate kinase.
   
 
 0.553
PIF1
ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.
  
 
 0.550
C7M84_009927
Nucleoside diphosphate kinase.
     
 0.549
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.