STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_008765SNF2_N domain-containing protein. (198 aa)    
Predicted Functional Partners:
C7M84_008767
Putative DNA repair and recombination protein RAD54-like.
 
      0.900
C7M84_012379
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.
  
 
 0.860
C7M84_003787
Putative Werner syndrome ATP-dependent helicase-like isoform X2.
  
 
 0.670
C7M84_003800
Putative Werner syndrome ATP-dependent helicase-like.
  
 
 0.670
C7M84_023657
Bloom syndrome protein-like protein.
  
 
 0.658
C7M84_000097
DNA repair and recombination protein RAD54B.
 
      0.638
C7M84_021853
Putative DNA repair protein RAD51-like 4.
  
 
 0.580
C7M84_023096
Putative PHD finger protein 20 isoform X7.
   
 0.548
C7M84_021125
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
   
 0.546
C7M84_021854
Putative DNA repair protein RAD51-like 4.
  
 
 0.544
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.