STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_007972RF_PROK_I domain-containing protein. (347 aa)    
Predicted Functional Partners:
C7M84_003863
MTS domain-containing protein.
  
 
 0.952
C7M84_008871
Putative 39S ribosomal protein L9, mitochondrial.
   
 
 0.850
C7M84_022711
Putative ribosomal protein S23e; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.845
C7M84_002630
Tyrosine--tRNA ligase.
  
  
 0.843
C7M84_005842
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.843
C7M84_000921
Putative 39S ribosomal protein L32.
  
 
 0.835
C7M84_013958
28S ribosomal protein S16.
  
 
 0.832
C7M84_009627
28S ribosomal protein S9, mitochondrial.
  
 
 0.830
C7M84_020559
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.809
C7M84_005423
39S ribosomal protein L19, mitochondrial.
  
 
 0.809
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.