STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_004929Putative CDGSH iron-sulfur domain-containing protein 3, mitochondrial. (138 aa)    
Predicted Functional Partners:
C7M84_000730
ZnF_CDGSH domain-containing protein.
   
  
 0.591
C7M84_015694
60s ribosomal protein l27a; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.562
C7M84_002338
Uncharacterized protein.
   
   0.558
C7M84_013958
28S ribosomal protein S16.
   
   0.556
C7M84_014256
Uncharacterized protein.
   
   0.552
C7M84_000888
Uncharacterized protein.
    
 
 0.495
C7M84_005842
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
   
   0.478
C7M84_016419
39S ribosomal protein L12, mitochondrial.
   
   0.474
C7M84_020173
39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
   0.470
C7M84_003775
Ribosomal protein L23.
   
    0.459
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.