STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_004501Female sterile homeotic protein. (751 aa)    
Predicted Functional Partners:
C7M84_012868
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.876
C7M84_000695
Putative transcription initiation factor TFIID subunit 7.
    
 
 0.857
C7M84_005141
Uncharacterized protein.
    
 
 0.702
C7M84_011159
Putative transcription initiation factor TFIID subunit 1 isoform X2.
    
 
0.641
C7M84_017593
Putative bifunctional arginine demethylase and lysyl-hydroxylase PSR isoform X1.
    
 
 0.638
C7M84_019013
Histone H2A; Belongs to the histone H2A family.
    
 
 0.625
C7M84_000634
Putative craniofacial development protein 1 isoform X1.
    
 
 0.553
CK2A
Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.
    
 
 0.548
C7M84_020795
Protein cereblon.
    
 
 0.540
C7M84_013244
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
 
  
 
 0.531
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.