STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_003258Putative glutamate--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (334 aa)    
Predicted Functional Partners:
C7M84_017607
Ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.972
C7M84_001842
Putative methionine--tRNA ligase, cytoplasmic isoform X2; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.966
C7M84_002311
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.948
C7M84_019102
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.948
C7M84_023327
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.948
C7M84_007249
Putative ATP-dependent RNA helicase DHX34.
  
 
 0.928
C7M84_007641
Putative neurofilament heavy polypeptide; Belongs to the universal ribosomal protein uL23 family.
   
 0.916
C7M84_002630
Tyrosine--tRNA ligase.
  
 0.911
C7M84_014325
Putative 60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.907
C7M84_008652
60S ribosomal protein L31.
   
 0.905
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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