STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_002988Putative isoleucine--tRNA ligase, mitochondrial isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family. (976 aa)    
Predicted Functional Partners:
C7M84_020517
Bifunctional glutamate/proline--tRNA ligase.
  
 0.999
C7M84_020511
Putative glutamyl-tRNA synthetase, cytoplasmic.
 
 0.999
C7M84_017607
Ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 0.999
C7M84_001842
Putative methionine--tRNA ligase, cytoplasmic isoform X2; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.960
C7M84_002630
Tyrosine--tRNA ligase.
  
 0.944
C7M84_007219
Putative valine--tRNA ligase isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.941
C7M84_018799
Putative arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.926
C7M84_018898
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
0.912
C7M84_013688
Putative proline--tRNA ligase, mitochondrial.
   
 0.899
C7M84_003615
Putative leucine--tRNA ligase, cytoplasmic isoform 1.
  
0.898
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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