STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_002339Putative tRNA modification GTPase GTPBP3, mitochondrial. (548 aa)    
Predicted Functional Partners:
C7M84_006544
Uncharacterized protein.
 0.973
C7M84_006543
Uncharacterized protein.
 
 0.973
C7M84_006421
Putative methyltransferase TARBP1.
   
 
 0.938
C7M84_014817
Uncharacterized protein.
  
 0.936
C7M84_005582
Putative endoplasmic reticulum-Golgi intermediate compartment protein 3.
  
 0.926
C7M84_020182
Endoplasmic reticulum-Golgi intermediate compartment protein.
  
 0.926
C7M84_014981
Uncharacterized protein.
  
 0.926
C7M84_013446
Endoplasmic reticulum-Golgi intermediate compartment protein 2.
  
 0.926
C7M84_002338
Uncharacterized protein.
    
 
 0.906
C7M84_007938
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 
 0.898
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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