STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_002227Putative ATP-dependent RNA helicase TDRD9. (1090 aa)    
Predicted Functional Partners:
C7M84_005836
Uncharacterized protein.
    
  0.960
C7M84_023282
Calcium homeostasis endoplasmic reticulum protein.
   
 0.792
C7M84_001874
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.740
C7M84_013180
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.641
C7M84_007802
U3 small nucleolar RNA-associated protein 18-like protein.
   
 0.637
C7M84_001977
WD_REPEATS_REGION domain-containing protein.
   
 0.636
C7M84_020727
Putative something about silencing protein 10.
   
 0.597
C7M84_017208
WD_REPEATS_REGION domain-containing protein.
   
 0.596
C7M84_001464
Pre-mRNA-splicing factor SLU7.
    
 0.594
C7M84_007714
Nucleolar protein 6.
   
 0.591
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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