STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_001954ATP-dependent zinc metalloprotease FtsH 2. (350 aa)    
Predicted Functional Partners:
C7M84_007249
Putative ATP-dependent RNA helicase DHX34.
   
 
 0.750
C7M84_020338
Prohibitin.
   
 0.724
C7M84_020172
Prohibitin.
   
 0.708
C7M84_020176
Prohibitin.
   
 0.708
C7M84_002338
Uncharacterized protein.
  
 
 0.657
C7M84_000127
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.656
C7M84_005978
Pyrroline-5-carboxylate synthetase.
     
 0.642
C7M84_007874
Ribosomal protein S11.
   
 
 0.639
C7M84_003874
Putative 60S ribosomal protein L23 isoform X1; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.608
C7M84_007146
Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.606
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.