STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_001433Regulation of nuclear pre-mRNA domain containing 2 protein. (859 aa)    
Predicted Functional Partners:
C7M84_014107
RNA polymerase II-associated protein 2.
   
 0.928
C7M84_004176
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.917
C7M84_017292
Putative DNA-directed RNA polymerase II subunit RPB7 isoform X1.
    
  0.841
C7M84_005614
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.836
C7M84_008805
Uncharacterized protein.
    
 0.801
C7M84_023850
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.770
C7M84_017790
Putative DNA-directed RNA polymerase II subunit RPB3.
    
 0.753
C7M84_015039
Regulation of nuclear pre-mRNA domain-containing protein 1B.
    
 0.743
C7M84_014232
Regulation of nuclear pre-mRNA domain-containing protein 1B.
    
 0.743
C7M84_014735
25-kDa subunit RNA polymerase.
    
  0.741
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.