STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_001374Histone domain-containing protein. (150 aa)    
Predicted Functional Partners:
C7M84_002046
Putative ubiquitously transcribed X chromosome tetratricopeptide repeat protein.
   
 0.868
C7M84_012868
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.830
C7M84_019013
Histone H2A; Belongs to the histone H2A family.
   
 0.674
C7M84_013483
Putative jmjC domain-containing histone demethylation protein 1.
    
 0.626
C7M84_010158
JmjC domain-containing histone demethylation protein 1.
    
 0.626
C7M84_016672
Putative RNA polymerase-associated protein LEO1.
   
 
 0.599
C7M84_011512
Putative histone-binding protein Caf1 isoform X4.
   
 0.591
C7M84_013180
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.588
C7M84_012833
Histone H2B; Belongs to the histone H2B family.
   
 0.587
C7M84_006390
Histone H2B; Belongs to the histone H2B family.
   
 0.587
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.