STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_000704Putative ubiquitin-like-conjugating enzyme ATG3. (154 aa)    
Predicted Functional Partners:
C7M84_010135
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.993
C7M84_000555
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.993
C7M84_004881
Autophagy related protein Atg3-like protein.
 
  
 
0.990
C7M84_015926
WD_REPEATS_REGION domain-containing protein.
   
 0.988
C7M84_015662
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.964
C7M84_021897
Gamma-aminobutyric acid receptor-associated protein.
   
 0.946
C7M84_000703
Autophagy related protein Atg3-like protein.
 
     0.933
C7M84_002737
Serine/threonine-protein kinase unc-51.
   
 
 0.878
C7M84_020108
Putative microtubule-associated proteins 1A/1B light chain 3A.
   
 0.848
C7M84_008281
Putative beclin-1-like protein isoform X1.
   
 0.843
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.