STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_000331Putative poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (447 aa)    
Predicted Functional Partners:
C7M84_022318
Polyribonucleotide nucleotidyltransferase 1, mitochondrial.
  
 0.801
C7M84_014195
Adipocyte plasma membrane-associated protein.
  
 0.795
C7M84_018418
Putative biotin--protein ligase.
  
  
 0.782
C7M84_002630
Tyrosine--tRNA ligase.
  
 
 0.778
C7M84_020410
Putative oligoribonuclease, mitochondrial.
     
 0.699
C7M84_020517
Bifunctional glutamate/proline--tRNA ligase.
  
  
 0.691
C7M84_020511
Putative glutamyl-tRNA synthetase, cytoplasmic.
  
  
 0.691
C7M84_017607
Ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.691
C7M84_009298
Mitochondrial ATP synthase delta subunit.
     
 0.684
C7M84_007306
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
  
 
 0.666
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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