STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_025195Uncharacterized protein. (416 aa)    
Predicted Functional Partners:
C7M84_004176
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.498
C7M84_014735
25-kDa subunit RNA polymerase.
    
 0.423
C7M84_004818
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC2-like.
    
 0.423
C7M84_017790
Putative DNA-directed RNA polymerase II subunit RPB3.
    
 0.423
C7M84_017292
Putative DNA-directed RNA polymerase II subunit RPB7 isoform X1.
    
 0.423
C7M84_023850
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.423
C7M84_022861
DNA-directed RNA polymerase.
    
 0.421
C7M84_003113
RPOL4c domain-containing protein.
    
 0.413
C7M84_022541
RNA_pol_L_2 domain-containing protein.
    
 0.412
C7M84_000879
Transcription elongation factor SPT5.
   
 0.402
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.