STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CasAType I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)    
Predicted Functional Partners:
CasB
Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
Cas7e
Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
Cas5e
Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
AMF96273.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
AMF96278.1
Type I-E CRISPR-associated endonuclease Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.960
AMF96279.1
Type I-E CRISPR-associated endoribonuclease Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.947
Cas6e
Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.943
AMF98281.1
Phosphate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.449
gcvA
Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
      
 0.442
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
      
 0.441
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.