STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF96432.1Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)    
Predicted Functional Partners:
CpaB-2
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.827
CpaB
Flp pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.824
AMF96431.1
Pilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.743
AMF96427.1
Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.717
AMF96429.1
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
  
 0.691
AMF96425.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.688
AMF96421.1
Pilus assembly protein TadF; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.575
AMF96422.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.562
AMF97332.1
Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.534
AMG01115.1
Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
  
 0.534
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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