Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMF96436.1Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (773 aa)    
Predicted Functional Partners:
apa1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.826
AMG00741.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.814
AMF99884.1
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
AMF96475.1
Alkaline serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
 
  
 0.745
AMF99041.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.744
AMF96435.1
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.735
AMF99429.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
AMF99784.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.697
mshI
MSHA biogenesis protein MshI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
AMF99488.1
Propeptide, peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.676
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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