PstC protein (Vibrio harveyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PstC

Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)

Predicted Functional Partners:

AMF97017.1

0.995

PstA

0.986

AMF97020.1

0.977

pstB

0.974

pstB-2

0.966

pstB-3

0.965

PstA-4

0.934

PstA-3

0.931

PstA-2

0.926

AMF99464.1

0.764

Your Current Organism:

Vibrio harveyi

NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMF97017.1	AMF97020.1	AL538_04320	AL538_04335	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AMF97017.1	AMF99464.1	AL538_04320	AL538_17180	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
AMF97017.1	PstA	AL538_04320	AL538_04325	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AMF97017.1	PstA-2	AL538_04320	AL538_12225	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AMF97017.1	PstA-3	AL538_04320	AL538_17170	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AMF97017.1	PstA-4	AL538_04320	AL538_17275	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AMF97017.1	PstC	AL538_04320	AL538_04330	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AMF97020.1	AMF97017.1	AL538_04335	AL538_04320	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AMF97020.1	AMF99464.1	AL538_04335	AL538_17180	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AMF97020.1	PstA	AL538_04335	AL538_04325	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AMF97020.1	PstA-2	AL538_04335	AL538_12225	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AMF97020.1	PstA-3	AL538_04335	AL538_17170	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AMF97020.1	PstA-4	AL538_04335	AL538_17275	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AMF97020.1	PstC	AL538_04335	AL538_04330	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AMF97020.1	pstB	AL538_04335	AL538_17270	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.632
AMF97020.1	pstB-2	AL538_04335	AL538_12230	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.574
AMF97020.1	pstB-3	AL538_04335	AL538_17165	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.570
AMF99464.1	AMF97017.1	AL538_17180	AL538_04320	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
AMF99464.1	AMF97020.1	AL538_17180	AL538_04335	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AMF99464.1	PstA	AL538_17180	AL538_04325	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About