STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF97261.1Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (846 aa)    
Predicted Functional Partners:
AMF99784.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.974
chb
beta-N-acetylhexosaminidase; Hydrolysis of terminal, non-reducing N-acetyl-beta-D- glucosamine residues in chitobiose and higher analogs, and in glycoproteins; Belongs to the glycosyl hydrolase 20 family.
 
  
 0.968
AMF97397.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
AMG01445.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 
0.947
AMG01230.1
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
AMG01389.1
Spindolin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.923
chbp
N,N'-diacetylchitobiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.912
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
   
 
 0.908
AMF96500.1
Chitin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.904
nagK
N-acetylglucosamine kinase; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
     
 0.900
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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