Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMF97280.1 | AMF97281.1 | AL538_05700 | AL538_05710 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.678 |
| AMF97280.1 | AMF97282.1 | AL538_05700 | AL538_05715 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.705 |
| AMF97280.1 | AMF99389.1 | AL538_05700 | AL538_05705 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.981 |
| AMF97280.1 | SigZ | AL538_05700 | AL538_19825 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.730 |
| AMF97280.1 | sigZ | AL538_05700 | AL538_26480 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.730 |
| AMF97281.1 | AMF97280.1 | AL538_05710 | AL538_05700 | 2-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.678 |
| AMF97281.1 | AMF97282.1 | AL538_05710 | AL538_05715 | 2-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
| AMF97281.1 | AMF99389.1 | AL538_05710 | AL538_05705 | 2-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.712 |
| AMF97282.1 | AMF97280.1 | AL538_05715 | AL538_05700 | ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.705 |
| AMF97282.1 | AMF97281.1 | AL538_05715 | AL538_05710 | ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
| AMF97282.1 | AMF99389.1 | AL538_05715 | AL538_05705 | ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.737 |
| AMF98635.1 | AMF99389.1 | AL538_13430 | AL538_05705 | Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.667 |
| AMF98635.1 | SigZ | AL538_13430 | AL538_19825 | Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.667 |
| AMF98635.1 | sigZ | AL538_13430 | AL538_26480 | Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.667 |
| AMF99389.1 | AMF97280.1 | AL538_05705 | AL538_05700 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.981 |
| AMF99389.1 | AMF97281.1 | AL538_05705 | AL538_05710 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-dehydropantoate 2-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.712 |
| AMF99389.1 | AMF97282.1 | AL538_05705 | AL538_05715 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.737 |
| AMF99389.1 | AMF98635.1 | AL538_05705 | AL538_13430 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.667 |
| AMF99389.1 | SigZ | AL538_05705 | AL538_19825 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.748 |
| AMF99389.1 | rpoA | AL538_05705 | AL538_10950 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.656 |
page 1 of 3