Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMF96874.1 | aspC | AL538_03565 | AL538_03065 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.903 |
| AMF96874.1 | metE | AL538_03565 | AL538_03440 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. | 0.905 |
| AMF96874.1 | metF | AL538_03565 | AL538_07850 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family. | 0.874 |
| AMF96874.1 | metH | AL538_03565 | AL538_07595 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.975 |
| AMF96874.1 | metK | AL538_03565 | AL538_06950 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.990 |
| AMF96874.1 | yebR | AL538_03565 | AL538_00895 | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | Free methionine-(R)-sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| AMF97814.1 | dcm | AL538_08900 | AL538_13910 | Modification methylase SinI; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.926 |
| AMF97814.1 | luxM | AL538_08900 | AL538_03405 | Modification methylase SinI; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| AMF97814.1 | metK | AL538_08900 | AL538_06950 | Modification methylase SinI; Derived by automated computational analysis using gene prediction method: Protein Homology. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.927 |
| aspC | AMF96874.1 | AL538_03065 | AL538_03565 | Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.903 |
| aspC | metE | AL538_03065 | AL538_03440 | Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. | 0.903 |
| aspC | metH | AL538_03065 | AL538_07595 | Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.919 |
| aspC | metK | AL538_03065 | AL538_06950 | Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.908 |
| aspC | yebR | AL538_03065 | AL538_00895 | Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Free methionine-(R)-sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.908 |
| dcm | AMF97814.1 | AL538_13910 | AL538_08900 | DNA cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Modification methylase SinI; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.926 |
| dcm | luxM | AL538_13910 | AL538_03405 | DNA cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| dcm | metK | AL538_13910 | AL538_06950 | DNA cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.927 |
| luxM | AMF97814.1 | AL538_03405 | AL538_08900 | Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Modification methylase SinI; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| luxM | dcm | AL538_03405 | AL538_13910 | Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.900 |
| luxM | metK | AL538_03405 | AL538_06950 | Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.900 |
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