STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspJType II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
gspI
Type II secretion system protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AMF98061.1
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
gspG
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
epsH
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
gspL
Type II secretion system protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.993
gspC
Type II secretion system protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
epsM
General secretion pathway protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.985
gspF
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.972
gspD
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
AMF98064.1
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.961
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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