Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mepAPeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. (279 aa)    
Predicted Functional Partners:
AMF98414.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.765
AMF96796.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
AMF96764.1
Nucleoside triphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
AMF98333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.596
AL538_02955
TyrR family transcriptional regulator; Regulates genes involved in the biosynthesis and transport of aromatic amino acids; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
AMF96797.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.517
dinF
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.502
AMF99772.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.502
AMG00852.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.502
AMF98416.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
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