STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMF99315.1Histone acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
AMF99317.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
prpE
propionate--CoA ligase; Catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.525
AMF96435.1
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
AMF99432.1
Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
AMF99334.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.456
AMF99316.1
Trypsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
AMG01376.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
AMF98049.1
AsmA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
AMG01375.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
AMF96301.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
Your Current Organism:
Vibrio harveyi
NCBI taxonomy Id: 669
Other names: ATCC 14126, Achromobacter harveyi, Beneckea harveyi, Beneckea neptuna, CAIM 513, CCUG 28584, CECT 525, CIP 103192, DSM 19623, IFO 15634, LMG 4044, LMG:4044, Lucibacterium harveyi, NBRC 15634, NCCB 80033, NCTC 12970, Photobacterium harveyi, Pseudomonas harveyi, V. harveyi, Vibrio carchariae, Vibrio sp. HENC-01, Vibrio sp. HENC-02, Vibrio sp. PG 001, Vibrio sp. PG 002, Vibrio sp. PG 006, Vibrio sp. PG 007, Vibrio trachuri
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.